GitLab

xTrait: interactive exploration of orthology relationships and functional data

generate a report on an experiment run on wiwam

vHRR: co-expression based gene function prediction

The stand alone, command line version of Tapir.

http://bioinformatics.psb.ugent.be/webtools/tapir/

Web version of Tapir: http://bioinformatics.psb.ugent.be/webtools/tapir/

If you have a list of genes that you would like to extract from a fasta file, this tool might help.

http://bioinformatics.psb.ugent.be/supplementary_data/erbon/nov2003/

An R-script covering the different steps of quantitative microbiome profiling (QMP) as described in the article 'Count your blessings: quantitative gut microbiome profiling'

PRocessor of RNA-Sequencing Experiments

Client APIs for PLAZA API (http://bioinformatics.psb.ugent.be/plaza/documentation/api)

Scripts for paper: Network motif modules in integrated gene regulatory networks of worm and plant

Utilities and CLI for MORPH bulk runs

Interactive figure generator for clustered expression data

Graphical library to visualize expression data

This project contains all scripts that I used for re-mapping the motifs using different mappers. Later comparison was done between different mappers by overlapping them with experimental ChIP-Seq data to see which mappers work best!

ksrates is a tool to position whole-genome duplications relative to speciation events using substitution-rate-adjusted mixed paralog-ortholog Ks distributions.