GitLab

ksrates is a tool to position whole-genome duplications relative to speciation events using substitution-rate-adjusted mixed paralog-ortholog Ks distributions.

vHRR: co-expression based gene function prediction

xTrait: interactive exploration of orthology relationships and functional data

Project has moved back to https://github.com/timdiels/CoExpNetViz

Cytoscape App for the Jesse graphlet counting algorithm https://github.com/biointec/jesse

Cytoscape App for the ISMAGS motif detection algorithm

Documentation website for abb deployed at: https://bedro.pages.psb.ugent.be/abb-website

If you have a list of genes that you would like to extract from a fasta file, this tool might help.

Collaboration with Microbiology group to evaluate peptides for antimicrobial activity. Script here is for cutting protein sequences into k mers

Interactive figure generator for clustered expression data

Genome analysis pipeline on midas

PRocessor of RNA-Sequencing Experiments

Web interface for the hfAIM tool

This project contains all scripts that I used for re-mapping the motifs using different mappers. Later comparison was done between different mappers by overlapping them with experimental ChIP-Seq data to see which mappers work best!

Utilities and CLI for MORPH bulk runs

Scripts for paper: Network motif modules in integrated gene regulatory networks of worm and plant

Client APIs for PLAZA API (http://bioinformatics.psb.ugent.be/plaza/documentation/api)

An R-script covering the different steps of quantitative microbiome profiling (QMP) as described in the article 'Count your blessings: quantitative gut microbiome profiling'