Explore projects

ksrates is a tool to position whole-genome duplications relative to speciation events using substitution-rate-adjusted mixed paralog-ortholog Ks distributions.

My PhD dissertation source files and build script (pandoc with LaTeX).

patched ctffind

vHRR: co-expression based gene function prediction

Documentation website for abb deployed at: https://bedro.pages.psb.ugent.be/abb-website

http://bioinformatics.psb.ugent.be/supplementary_data/erbon/nov2003/

Cytoscape App for the ISMAGS motif detection algorithm

Collaboration with Microbiology group to evaluate peptides for antimicrobial activity. Script here is for cutting protein sequences into k mers

This project contains all scripts that I used for re-mapping the motifs using different mappers. Later comparison was done between different mappers by overlapping them with experimental ChIP-Seq data to see which mappers work best!

If you have a list of genes that you would like to extract from a fasta file, this tool might help.

Utilities and CLI for MORPH bulk runs

Client APIs for PLAZA API (http://bioinformatics.psb.ugent.be/plaza/documentation/api)

Web version of Tapir: http://bioinformatics.psb.ugent.be/webtools/tapir/

Web interface for the hfAIM tool

generate a report on an experiment run on wiwam

An R-script covering the different steps of quantitative microbiome profiling (QMP) as described in the article 'Count your blessings: quantitative gut microbiome profiling'