Genome analysis pipeline on midas

Project has moved back to https://github.com/timdiels/CoExpNetViz

The stand alone, command line version of Tapir.

http://bioinformatics.psb.ugent.be/webtools/tapir/

Graphical library to visualize expression data

Interactive figure generator for clustered expression data

Scripts for paper: Network motif modules in integrated gene regulatory networks of worm and plant

Cytoscape App for the Jesse graphlet counting algorithm https://github.com/biointec/jesse

An R-script covering the different steps of quantitative microbiome profiling (QMP) as described in the article 'Count your blessings: quantitative gut microbiome profiling'

generate a report on an experiment run on wiwam

Web interface for the hfAIM tool

Web version of Tapir: http://bioinformatics.psb.ugent.be/webtools/tapir/

Client APIs for PLAZA API (http://bioinformatics.psb.ugent.be/plaza/documentation/api)

Utilities and CLI for MORPH bulk runs

If you have a list of genes that you would like to extract from a fasta file, this tool might help.