Explore projects

Web version of Tapir: http://bioinformatics.psb.ugent.be/webtools/tapir/

The stand alone, command line version of Tapir.

http://bioinformatics.psb.ugent.be/webtools/tapir/

http://bioinformatics.psb.ugent.be/supplementary_data/erbon/nov2003/

Graphical library to visualize expression data

An R-script covering the different steps of quantitative microbiome profiling (QMP) as described in the article 'Count your blessings: quantitative gut microbiome profiling'

Client APIs for PLAZA API (http://bioinformatics.psb.ugent.be/plaza/documentation/api)

Scripts for paper: Network motif modules in integrated gene regulatory networks of worm and plant

Utilities and CLI for MORPH bulk runs

This project contains all scripts that I used for re-mapping the motifs using different mappers. Later comparison was done between different mappers by overlapping them with experimental ChIP-Seq data to see which mappers work best!

Web interface for the hfAIM tool

Genome analysis pipeline on midas

Interactive figure generator for clustered expression data

Collaboration with Microbiology group to evaluate peptides for antimicrobial activity. Script here is for cutting protein sequences into k mers

If you have a list of genes that you would like to extract from a fasta file, this tool might help.

Documentation website for abb deployed at: https://bedro.pages.psb.ugent.be/abb-website