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Web version of Tapir: http://bioinformatics.psb.ugent.be/webtools/tapir/
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The stand alone, command line version of Tapir.
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Graphical library to visualize expression data
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generate a report on an experiment run on wiwam
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An R-script covering the different steps of quantitative microbiome profiling (QMP) as described in the article 'Count your blessings: quantitative gut microbiome profiling'
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Client APIs for PLAZA API (http://bioinformatics.psb.ugent.be/plaza/documentation/api)
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Scripts for paper: Network motif modules in integrated gene regulatory networks of worm and plant
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Utilities and CLI for MORPH bulk runs
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This project contains all scripts that I used for re-mapping the motifs using different mappers. Later comparison was done between different mappers by overlapping them with experimental ChIP-Seq data to see which mappers work best!
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PRocessor of RNA-Sequencing Experiments
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Genome analysis pipeline on midas
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Interactive figure generator for clustered expression data
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