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Genome analysis pipeline on midas
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Graphical library to visualize expression data
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Project has moved back to https://github.com/timdiels/CoExpNetViz
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Cytoscape App for the Jesse graphlet counting algorithm https://github.com/biointec/jesse
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Interactive figure generator for clustered expression data
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generate a report on an experiment run on wiwam
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PRocessor of RNA-Sequencing Experiments
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vHRR: co-expression based gene function prediction
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If you have a list of genes that you would like to extract from a fasta file, this tool might help.
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Collaboration with Microbiology group to evaluate peptides for antimicrobial activity. Script here is for cutting protein sequences into k mers
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Web version of Tapir: http://bioinformatics.psb.ugent.be/webtools/tapir/
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Scripts for paper: Network motif modules in integrated gene regulatory networks of worm and plant
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Cytoscape App for the ISMAGS motif detection algorithm
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The stand alone, command line version of Tapir.