Genome analysis pipeline on midas

Graphical library to visualize expression data

Project has moved back to https://github.com/timdiels/CoExpNetViz

Cytoscape App for the Jesse graphlet counting algorithm https://github.com/biointec/jesse

Interactive figure generator for clustered expression data

Utilities and CLI for MORPH bulk runs

generate a report on an experiment run on wiwam

PRocessor of RNA-Sequencing Experiments

If you have a list of genes that you would like to extract from a fasta file, this tool might help.

patched ctffind

Collaboration with Microbiology group to evaluate peptides for antimicrobial activity. Script here is for cutting protein sequences into k mers

Web version of Tapir: http://bioinformatics.psb.ugent.be/webtools/tapir/

Scripts for paper: Network motif modules in integrated gene regulatory networks of worm and plant

Cytoscape App for the ISMAGS motif detection algorithm