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Genome analysis pipeline on midas
Graphical library to visualize expression data
Project has moved back to https://github.com/timdiels/CoExpNetViz
Cytoscape App for the Jesse graphlet counting algorithm https://github.com/biointec/jesse
Interactive figure generator for clustered expression data
generate a report on an experiment run on wiwam
PRocessor of RNA-Sequencing Experiments
vHRR: co-expression based gene function prediction
If you have a list of genes that you would like to extract from a fasta file, this tool might help.
Collaboration with Microbiology group to evaluate peptides for antimicrobial activity.
Script here is for cutting protein sequences into k mers
Web interface for the hfAIM tool
Web version of Tapir: http://bioinformatics.psb.ugent.be/webtools/tapir/
Scripts for paper: Network motif modules in integrated gene regulatory networks of worm and plant
Cytoscape App for the ISMAGS motif detection algorithm
The stand alone, command line version of Tapir.