Scripts for paper: Network motif modules in integrated gene regulatory networks of worm and plant

Cytoscape App for the ISMAGS motif detection algorithm

The stand alone, command line version of Tapir.

http://bioinformatics.psb.ugent.be/webtools/tapir/

Client APIs for PLAZA API (http://bioinformatics.psb.ugent.be/plaza/documentation/api)

ksrates is a tool to position whole-genome duplications relative to speciation events using substitution-rate-adjusted mixed paralog-ortholog Ks distributions.

Graphical library to visualize expression data

http://bioinformatics.psb.ugent.be/supplementary_data/erbon/nov2003/

An R-script covering the different steps of quantitative microbiome profiling (QMP) as described in the article 'Count your blessings: quantitative gut microbiome profiling'

Web interface for the hfAIM tool

This project contains all scripts that I used for re-mapping the motifs using different mappers. Later comparison was done between different mappers by overlapping them with experimental ChIP-Seq data to see which mappers work best!