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## About ###
ModuleViewer is a tool to directly generate annotated heat maps from gene clusters and diverse biological data. It visualizes gene expression profiles and co-regulated gene clusters and their predicted regulators in the context of regulatory networks.
![Module 17](docs/module_17.png)
![Module 17](docs/module_432.png)
## File Types ####
......@@ -18,7 +18,7 @@ Creation of images relies on at least two types of data: the data matrix and the
Demo data can be downloaded here: [Demo Data](ModuleViewerDemoData).
The regulator tree lets the user visualize regulators or other genes associated with the module, as an extra matrix above the main gene expression matrix.
These "associated genes" can even be a complete other module, so *two modules can be compared to eachother*. To do this, make a copy of the original gene file, but replace the module ID of the modules to be compared, with the ID of the modules to be compared to. Then load this second file as a "regulator file". In a similar way, a new MVF file could be constructed, copying the original file, replacing the module IDs and changing the OBJECT key from GENES to REGULATORS.
These "associated genes" can even be a complete other module, so *two modules can be compared to each other*. To do this, make a copy of the original gene file, but replace the module ID of the modules to be compared, with the ID of the modules to be compared to. Then load this second file as a "regulator file". In a similar way, a new MVF file could be constructed, copying the original file, replacing the module IDs and changing the OBJECT key from GENES to REGULATORS.
## Running ModuleViewer ######
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