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Scripts for paper: Network motif modules in integrated gene regulatory networks of worm and plant
Cytoscape App for the ISMAGS motif detection algorithm
GNU General Public License v2.0
GNU General Public License v3.0
ksrates is a tool to position whole-genome duplications relative to speciation events using substitution-rate-adjusted mixed paralog-ortholog Ks distributions.
GNU Lesser General Public License v3.0
Graphical library to visualize expression data
An R-script covering the different steps of quantitative microbiome profiling (QMP) as described in the article 'Count your blessings: quantitative gut microbiome profiling'
Web interface for the hfAIM tool
This project contains all scripts that I used for re-mapping the motifs using different mappers. Later comparison was done between different mappers by overlapping them with experimental ChIP-Seq data to see which mappers work best!