Genome analysis pipeline on midas
ksrates is a tool to position whole-genome duplications relative to speciation events using substitution-rate-adjusted mixed paralog-ortholog Ks distributions.
Web interface for the hfAIM tool
Collaboration with Microbiology group to evaluate peptides for antimicrobial activity.
Script here is for cutting protein sequences into k mers
My PhD dissertation source files and build script (pandoc with LaTeX).
This project contains all scripts that I used for re-mapping the motifs using different mappers. Later comparison was done between different mappers by overlapping them with experimental ChIP-Seq data to see which mappers work best!
Utilities and CLI for MORPH bulk runs
Scripts for paper: Network motif modules in integrated gene regulatory networks of worm and plant
vHRR: co-expression based gene function prediction