Explore projects

Genome analysis pipeline on midas

Project has moved back to https://github.com/timdiels/CoExpNetViz

Scripts for paper: Network motif modules in integrated gene regulatory networks of worm and plant

Cytoscape App for the ISMAGS motif detection algorithm

Web version of Tapir: http://bioinformatics.psb.ugent.be/webtools/tapir/

The stand alone, command line version of Tapir.

http://bioinformatics.psb.ugent.be/webtools/tapir/

Client APIs for PLAZA API (http://bioinformatics.psb.ugent.be/plaza/documentation/api)

Graphical library to visualize expression data

An R-script covering the different steps of quantitative microbiome profiling (QMP) as described in the article 'Count your blessings: quantitative gut microbiome profiling'

This project contains all scripts that I used for re-mapping the motifs using different mappers. Later comparison was done between different mappers by overlapping them with experimental ChIP-Seq data to see which mappers work best!

Interactive figure generator for clustered expression data

My PhD dissertation source files and build script (pandoc with LaTeX).

patched ctffind

this is a test for github

http://bioinformatics.psb.ugent.be/supplementary_data/erbon/nov2003/

Collaboration with Microbiology group to evaluate peptides for antimicrobial activity. Script here is for cutting protein sequences into k mers

Cytoscape App for the Jesse graphlet counting algorithm https://github.com/biointec/jesse