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Perform lognormal mixture modeling on reciprocally retained paralogs

Merged Cecilia SENSALARI requested to merge mixture into master
  • Lognormal mixture modeling is implemented for reciprocally retained gene families
  • The code supports the use both of lambda rank and of combined rank for rec.ret. data
  • To be distinguishable, the files relative to rec.ret. paralogs (i.e. the MCL file and the Ks file) are named after the rank type they are produced from (e.g. lambda)
  • The "extra" methods for paralogs analyses have been updated to include LMM on reciprocally retained data
Edited by Cecilia SENSALARI

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