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Home · Changes

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Markdown authored Jun 10, 2015 by Thomas Van Parys's avatar Thomas Van Parys
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# Tapir #
Web version of Tapir:
http://bioinformatics.psb.ugent.be/webtools/tapir/
## Changes ###
yalin has adjusted the scripts so tapir can be run from the command line and on the cluster.
thpar has added a simple fasta parser in the module FastaCheck.pm which prevents invalid input files to be passed on to the tapir algorithm.
## Locations ##
The tapir tool is spread over multiple locations on the servers.
Webtool:
`/www/group/biocomp/extra/bioinformatics_prod/webtools/tapir`
Data (on shaman.psblocal):
`/data/tapir`
To update microRNA files, the files in this directory should be replaced. Each file gets an option entry in the index.php file of the webtool.
Scripts:
`/www/group/biocomp/extra/shaman/cgi-apps/biocomp/tapir`
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