deep_genome issueshttps://gitlab.psb.ugent.be/groups/deep_genome/-/issues2021-04-14T15:02:26Zhttps://gitlab.psb.ugent.be/deep_genome/coexpnetviz_cytoscape_app/-/issues/3Layouting NullPointerException2021-04-14T15:02:26ZTim DielsLayouting NullPointerExceptionThe CoExpNetViz layouting function throws NullPointerException for some data sets. It happens often enough, should be able to bump into it quickly enough.The CoExpNetViz layouting function throws NullPointerException for some data sets. It happens often enough, should be able to bump into it quickly enough.https://gitlab.psb.ugent.be/deep_genome/coexpnetviz_cytoscape_app/-/issues/1Update to match the new CoExpNetViz version2021-04-14T15:01:14ZTim DielsUpdate to match the new CoExpNetViz versionThe output format has changed in the latest CoExpNetViz version, this requires changes in the plugin or it will stop working as soon as we update the website to the new version.The output format has changed in the latest CoExpNetViz version, this requires changes in the plugin or it will stop working as soon as we update the website to the new version.https://gitlab.psb.ugent.be/deep_genome/coexpnetviz_cytoscape_app/-/issues/2Run CoExpNetViz locally instead of through the website2021-04-14T15:00:41ZTim DielsRun CoExpNetViz locally instead of through the websiteCoExpNetViz is not computationally intensive, plus it's better for privacy/security if a user doesn't need to upload files to our server; this also avoids GDPR I guess. So it would be better if instead we could include CoExpNetViz inside...CoExpNetViz is not computationally intensive, plus it's better for privacy/security if a user doesn't need to upload files to our server; this also avoids GDPR I guess. So it would be better if instead we could include CoExpNetViz inside the plugin, or require users to install it along side it, and then configure the plugin to call it. The latter is probably more flexible, allowing e.g. running it in Docker.https://gitlab.psb.ugent.be/deep_genome/coexpnetviz_cytoscape_app/-/issues/4Update cytoscape page description2021-04-14T14:58:40ZTim DielsUpdate cytoscape page descriptionUpdate plugin description on the cytoscape page for our plugin. It doesn't say much, it should be an elevator pitch, and then reference the docs for more info.Update plugin description on the cytoscape page for our plugin. It doesn't say much, it should be an elevator pitch, and then reference the docs for more info.