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An R-script covering the different steps of quantitative microbiome profiling (QMP) as described in the article 'Count your blessings: quantitative gut microbiome profiling'
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Cytoscape App for the Jesse graphlet counting algorithm https://github.com/biointec/jesse
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Scripts for paper: Network motif modules in integrated gene regulatory networks of worm and plant
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Interactive figure generator for clustered expression data
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Graphical library to visualize expression data
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The stand alone, command line version of Tapir.
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Project has moved back to https://github.com/timdiels/CoExpNetViz
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Genome analysis pipeline on midas
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