Commits · cba410c7a25d1219697fe2b8959e8b5680cfac36 · deep_genome / cedalion · GitLab

12 Nov, 2018 1 commit
- Use xvfb-run to emulate x-server for ev01 (fixes #42) · cba410c7
  Thomas Van Parys authored Nov 12, 2018
  
  cba410c7
08 Nov, 2018 2 commits
- Allow to save back to loaded species file (fixes #48) · 9208393f
  Thomas Van Parys authored Nov 08, 2018
  
  9208393f
- Load optional species file in launcher (#48) · da9e9463
  Thomas Van Parys authored Nov 08, 2018
  
  da9e9463
07 Nov, 2018 4 commits
- Return None,None when constructing a map (#45) · b44ed5e2
  Thomas Van Parys authored Nov 07, 2018
  
  b44ed5e2
- Template example correction · a2cf93a9
  Thomas Van Parys authored Nov 07, 2018
  
  a2cf93a9
- Store nextflow.config in git repo as a template · 47bf422c
  Thomas Van Parys authored Nov 07, 2018
  
  47bf422c
- Make venv location configurable (fixes #46) · 4ef2daf1
  Thomas Van Parys authored Nov 07, 2018
  
  4ef2daf1
31 Oct, 2018 3 commits
- Don't strip away leading and trailing value characters (double quotes) (#44) · 9fd7a44b
  Thomas Van Parys authored Oct 31, 2018
  
  9fd7a44b
- Update annotation header with tabs (#44) · f815b29c
  Thomas Van Parys authored Oct 31, 2018
  
  f815b29c
- Plaza annotation files are TAB separated now (fixes #44) · 2f284c67
  Thomas Van Parys authored Oct 31, 2018
  
  2f284c67
30 Oct, 2018 1 commit
- Use the channel object for storing the newSpeciesId (#43) · e0d07ccb
  Thomas Van Parys authored Oct 30, 2018
  
  e0d07ccb
25 Oct, 2018 5 commits
- Add indexes on a sorted list instead of on a stream (fixes #41) · 288d0e66
  Thomas Van Parys authored Oct 25, 2018
  
  288d0e66
- Use new plaza API interface · 55dd7ebb
  Thomas Van Parys authored Oct 25, 2018
  
  55dd7ebb
- Sort species on Cedalion ID (name) before creating species.txt (fixes #41) · 4c19885e
  Thomas Van Parys authored Oct 25, 2018
  
  4c19885e
- Let orthofinder read from the same species.txt as the other processes (#41) · 601103cb
  Thomas Van Parys authored Oct 25, 2018
  
  601103cb
- Memory retry policy for Explore Features · b3d39d70
  Thomas Van Parys authored Oct 25, 2018
  
  b3d39d70
23 Oct, 2018 2 commits
- And slightly more memory for EF (fixes #35) · cab0778a
  Thomas Van Parys authored Oct 23, 2018
  
  cab0778a
- EF process did not define a maximum time (#35) · 0a456842
  Thomas Van Parys authored Oct 23, 2018
  
  0a456842
18 Oct, 2018 2 commits
- Used fixed memory req for EF again (#36) · 6fae46b1
  Thomas Van Parys authored Oct 18, 2018
  
  6fae46b1
- Catch KeyError instead of generic Exception when gene not found (#34) · fdd558d2
  Thomas Van Parys authored Oct 18, 2018
  
  fdd558d2
17 Oct, 2018 3 commits
- Merge branch 'thpar_ef_data' · 63e2eecc
  Thomas Van Parys authored Oct 17, 2018
  
  63e2eecc
- case typo · 72daae6c
  Thomas Van Parys authored Oct 17, 2018
  
  72daae6c
- Load images and info from data source (fixes #33) · 90770a70
  Thomas Van Parys authored Oct 17, 2018
  
  90770a70
12 Oct, 2018 2 commits
- Rename data resource EF · 8ce282ff
  Thomas Van Parys authored Oct 12, 2018
  
  8ce282ff
- Dynamically increase memory for EF runs (#35) · 34d17cd7
  Thomas Van Parys authored Oct 12, 2018
  
  34d17cd7
11 Oct, 2018 7 commits
- Find absolute path to main.nf (#32) · c709e432
  Thomas Van Parys authored Oct 11, 2018
  
  c709e432
- Launch script is generated (#32) · c534d980
  Thomas Van Parys authored Oct 11, 2018
  
  c534d980
- Launcher entry point in setup.py · db5170a2
  Thomas Van Parys authored Oct 11, 2018
  
  db5170a2
- Check for valid species file (#32) · 05e3304b
  Thomas Van Parys authored Oct 11, 2018
  
  05e3304b
- Launcher looks up plaza ids and shows help, errors and warnings · c42bcaff
  Thomas Van Parys authored Oct 11, 2018
  
  c42bcaff
- Command line interface to Plaza API working · 4edb9ef1
  Thomas Van Parys authored Oct 11, 2018
  
  4edb9ef1
- Move launcher script · bfda4ecb
  Thomas Van Parys authored Oct 11, 2018
  
  bfda4ecb
10 Oct, 2018 1 commit
- Rename and extend plaza-ftp to plaza-api · 6a24a145
  Thomas Van Parys authored Oct 10, 2018
  
  6a24a145
09 Oct, 2018 3 commits
- Adding, editing and saving options work (#32) · 99b0bfc1
  Thomas Van Parys authored Oct 09, 2018
  
  99b0bfc1
- Show species options (#32) · 90ed483b
  Thomas Van Parys authored Oct 09, 2018
  
  90ed483b
- Add and delete species (#32) · c31c8958
  Thomas Van Parys authored Oct 09, 2018
  
  c31c8958
08 Oct, 2018 3 commits
- Prompt menu (#32) · a08fd506
  Thomas Van Parys authored Oct 08, 2018
  
  a08fd506
- Yeah, it's still empty · d863a8cf
  Thomas Van Parys authored Oct 08, 2018
  
  d863a8cf
- Start the launcher script (#32) · d3c81012
  Thomas Van Parys authored Oct 08, 2018
  
  d3c81012
05 Oct, 2018 1 commit
- Update overview with plaza downloads (#28) · 42306bd9
  Thomas Van Parys authored Oct 05, 2018
  
  42306bd9