Commits · c534d980f46722e2749abaa833c7fe867ac1aa90 · deep_genome / cedalion · GitLab

11 Oct, 2018 6 commits
- Launch script is generated (#32) · c534d980
  Thomas Van Parys authored Oct 11, 2018
  
  c534d980
- Launcher entry point in setup.py · db5170a2
  Thomas Van Parys authored Oct 11, 2018
  
  db5170a2
- Check for valid species file (#32) · 05e3304b
  Thomas Van Parys authored Oct 11, 2018
  
  05e3304b
- Launcher looks up plaza ids and shows help, errors and warnings · c42bcaff
  Thomas Van Parys authored Oct 11, 2018
  
  c42bcaff
- Command line interface to Plaza API working · 4edb9ef1
  Thomas Van Parys authored Oct 11, 2018
  
  4edb9ef1
- Move launcher script · bfda4ecb
  Thomas Van Parys authored Oct 11, 2018
  
  bfda4ecb
10 Oct, 2018 1 commit
- Rename and extend plaza-ftp to plaza-api · 6a24a145
  Thomas Van Parys authored Oct 10, 2018
  
  6a24a145
09 Oct, 2018 3 commits
- Adding, editing and saving options work (#32) · 99b0bfc1
  Thomas Van Parys authored Oct 09, 2018
  
  99b0bfc1
- Show species options (#32) · 90ed483b
  Thomas Van Parys authored Oct 09, 2018
  
  90ed483b
- Add and delete species (#32) · c31c8958
  Thomas Van Parys authored Oct 09, 2018
  
  c31c8958
08 Oct, 2018 3 commits
- Prompt menu (#32) · a08fd506
  Thomas Van Parys authored Oct 08, 2018
  
  a08fd506
- Yeah, it's still empty · d863a8cf
  Thomas Van Parys authored Oct 08, 2018
  
  d863a8cf
- Start the launcher script (#32) · d3c81012
  Thomas Van Parys authored Oct 08, 2018
  
  d3c81012
05 Oct, 2018 7 commits
- Update overview with plaza downloads (#28) · 42306bd9
  Thomas Van Parys authored Oct 05, 2018
  
  42306bd9
- Missing fasta files are automatically downloaded from Plaza (fixes #28) · 3edd8281
  Thomas Van Parys authored Oct 05, 2018
  
  3edd8281
- use correct ftp option prot · 47df9ded
  Thomas Van Parys authored Oct 05, 2018
  
  47df9ded
- Option to choose between annot/cds/prot when retrieving plaza ftp (#28) · 387dfd11
  Thomas Van Parys authored Oct 05, 2018
  
  387dfd11
- Let Cedalion download missing data from plaza (#28) · b1d3a033
  Thomas Van Parys authored Oct 05, 2018
  
  b1d3a033
- Update overview · 5ebc0bf6
  Thomas Van Parys authored Oct 05, 2018
  
  5ebc0bf6
- Overview update (ev01 input) · 50a17e70
  Thomas Van Parys authored Oct 05, 2018
  
  50a17e70
04 Oct, 2018 3 commits
- Syntax errors · a1bc996d
  Thomas Van Parys authored Oct 04, 2018
  
  a1bc996d
- Rename Explore Features output directory (fixes #31) · 6684d470
  Thomas Van Parys authored Oct 04, 2018
  
  6684d470
- Concatenate and cut interproscan results (#30) · 0408b24b
  Thomas Van Parys authored Oct 04, 2018
  
  0408b24b
03 Oct, 2018 5 commits
- Let relative data paths be relative to the input directory (#27) · 168b0708
  Thomas Van Parys authored Oct 03, 2018
  
  168b0708
- tweaking · 8403f050
  Thomas Van Parys authored Oct 03, 2018
  
  8403f050
- Remove species filters (#14) · 26b1328c
  Thomas Van Parys authored Oct 03, 2018
  
  26b1328c
- Updated overview without species filters (#14) · 93b3d500
  Thomas Van Parys authored Oct 03, 2018
  
  93b3d500
- Overview: be consistent in representation of channels · ff28204e
  Thomas Van Parys authored Oct 03, 2018
  
  ff28204e
02 Oct, 2018 9 commits
- Update workflow overview and introduce anonymous publish channels · 6b068706
  Thomas Van Parys authored Oct 02, 2018
  
  6b068706
- Dir structure for WGD processes · e5973c6d
  Thomas Van Parys authored Oct 02, 2018
  
  e5973c6d
- Ignore gene prefixes for WGD Ks · 28b9c939
  Thomas Van Parys authored Oct 02, 2018
  
  28b9c939
- Split up WGD branch in paranome and one vs one lines · 44d8a2ad
  Thomas Van Parys authored Oct 02, 2018
  
  44d8a2ad
- Experimenting with WGD mem requirements · 193c8dad
  Thomas Van Parys authored Oct 02, 2018
  
  193c8dad
- Don't forget to activate venv for all WGD processes · 3f303515
  Thomas Van Parys authored Oct 02, 2018
  
  3f303515
- Increase KSD memory on every attempt · 242ace50
  Thomas Van Parys authored Oct 02, 2018
  
  242ace50
- Syntax error in cds mapping · 88970e6e
  Thomas Van Parys authored Oct 02, 2018
  
  88970e6e
- Try to leave a duplicate input file empty · 6cad650f
  Thomas Van Parys authored Oct 02, 2018
  
  6cad650f
01 Oct, 2018 3 commits
- Run WGD processes on the cluster · 060659cb
  Thomas Van Parys authored Oct 01, 2018
  
  060659cb
- MCL for paranome needs to be renamed after all · 30a0c253
  Thomas Van Parys authored Oct 01, 2018
  
  30a0c253
- Do not rename MCL outputs · 6a5e5762
  Thomas Van Parys authored Oct 01, 2018
  
  6a5e5762