Commit cba410c7 authored by Thomas Van Parys's avatar Thomas Van Parys
Browse files

Use xvfb-run to emulate x-server for ev01 (fixes #42)

parent 9208393f
...@@ -727,6 +727,7 @@ phymlPublish ...@@ -727,6 +727,7 @@ phymlPublish
.set{ phymlTree } .set{ phymlTree }
//requires the ev01 pip package to be installed in the Cedalion venv //requires the ev01 pip package to be installed in the Cedalion venv
//also needs the xvfb drivers to be installed, to emulate an X-server
process ev01 { process ev01 {
publishDir "${params.output}/parsimony", mode: 'copy' publishDir "${params.output}/parsimony", mode: 'copy'
memory '4 GB' memory '4 GB'
...@@ -742,7 +743,7 @@ process ev01 { ...@@ -742,7 +743,7 @@ process ev01 {
script: script:
""" """
$activate_venv $activate_venv
ev01 cedalion_ -gs ${gene_info} ${domain_annotation} ${species_tree} xvfb-run ev01 cedalion_ -gs ${gene_info} ${domain_annotation} ${species_tree}
""" """
} }
......
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