Commit cba410c7 authored by Thomas Van Parys's avatar Thomas Van Parys
Browse files

Use xvfb-run to emulate x-server for ev01 (fixes #42)

parent 9208393f
......@@ -727,6 +727,7 @@ phymlPublish
.set{ phymlTree }
//requires the ev01 pip package to be installed in the Cedalion venv
//also needs the xvfb drivers to be installed, to emulate an X-server
process ev01 {
publishDir "${params.output}/parsimony", mode: 'copy'
memory '4 GB'
......@@ -742,7 +743,7 @@ process ev01 {
script:
"""
$activate_venv
ev01 cedalion_ -gs ${gene_info} ${domain_annotation} ${species_tree}
xvfb-run ev01 cedalion_ -gs ${gene_info} ${domain_annotation} ${species_tree}
"""
}
......
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