Commit 8180c0fa authored by timdiels's avatar timdiels
Browse files

add to: clime: activate venv first

parent c467e2f4
...@@ -625,6 +625,7 @@ process climeGeneInfo { ...@@ -625,6 +625,7 @@ process climeGeneInfo {
script: script:
""" """
$activate_venv
cedalion-gene-info --species $speciesFile --output gene_info.txt cedalion-gene-info --species $speciesFile --output gene_info.txt
""" """
} }
...@@ -657,6 +658,7 @@ process climeMatrix { ...@@ -657,6 +658,7 @@ process climeMatrix {
script: script:
""" """
$activate_venv
cedalion-clime-matrix --row-species $species $colSpecies --genes $geneInfoFile --gene-families $orthoGroups --output ${species}.clime_matrix cedalion-clime-matrix --row-species $species $colSpecies --genes $geneInfoFile --gene-families $orthoGroups --output ${species}.clime_matrix
""" """
} }
......
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