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deep_genome
cedalion
Commits
541ec443
Commit
541ec443
authored
Nov 16, 2018
by
Thomas Van Parys
Browse files
Add shebang to launcher (fixes
#59
)
parent
47b11f60
Changes
1
Hide whitespace changes
Inline
Side-by-side
cedalion/scripts/launcher.py
View file @
541ec443
...
...
@@ -303,6 +303,7 @@ def prompt(species_file):
workDir
=
workDirEntered
scriptLines
=
[]
scriptLines
.
append
(
"#!/bin/bash"
)
scriptLines
.
append
(
"module load nextflow"
)
scriptLines
.
append
(
"export NXF_WORK={}"
.
format
(
workDir
))
scriptLines
.
append
(
"nextflow run {} --name {} --input {} --output {}"
.
format
(
main_nf_path
,
runName
,
inputDir
,
outputDir
))
...
...
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