Commit 356059a3 authored by timdiels's avatar timdiels
Browse files

PhyML: disable

parent 959d302d
......@@ -161,7 +161,7 @@ async def _organise_result(context, gene_families_file, phylogeny_tree_file, go_
output_directory = job_directory / 'output'
output_directory.mkdir()
(output_directory / 'gene_families.txt').symlink_to(gene_families_file)
(output_directory / 'phylogeny_tree.newick').symlink_to(phylogeny_tree_file)
# (output_directory / 'phylogeny_tree.newick').symlink_to(phylogeny_tree_file)
(output_directory / 'go_annotations').symlink_to(go_annotations_directory)
readme_file = job_directory / 'README.rst'
path_.write(readme_file, dedent('''\
......@@ -228,7 +228,8 @@ async def _orthomcl_phyml(context, orthomcl_fasta_file, fastas_directory, filter
phylogeny_tree_file : Path
'''
gene_families_file = await orthomcl.orthomcl(context, orthomcl_fasta_file, fastas_directory)
phylogeny_tree_file = await phyml(context, gene_families_file, filtered_fasta_files)
# phylogeny_tree_file = await phyml(context, gene_families_file, filtered_fasta_files)
phylogeny_tree_file = None
return (gene_families_file, phylogeny_tree_file)
def _predict_go_terms_call_repr(f, kwargs):
......
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