Commit 1684342e authored by Thomas Van Parys's avatar Thomas Van Parys
Browse files

Give WGD ksd more time and limit with mp500 flag

parent b5478d0c
......@@ -1100,7 +1100,7 @@ process wgd_ksd_paranome{
module 'paml'
module 'fasttree'
time '10h'
time '15h'
memory { 6.GB + 4.GB * task.attempt }
errorStrategy { task.attempt < 5 ? 'retry' : 'finish' }
......@@ -1117,7 +1117,7 @@ process wgd_ksd_paranome{
"""
$activate_venv
OMP_NUM_THREADS=4 wgd ksd $mcl_file $species_cds_fasta -o . --ignore_prefixes
OMP_NUM_THREADS=4 wgd ksd $mcl_file $species_cds_fasta -mp500 -o . --ignore_prefixes
mv *.ks.svg ${species}\\.ks.svg
mv *.ks.tsv ${species}\\.ks.tsv
"""
......@@ -1132,7 +1132,7 @@ process wgd_ksd_one_v_one{
module 'paml'
module 'fasttree'
time '10h'
time '12h'
memory { 6.GB + 4.GB * task.attempt }
errorStrategy { task.attempt < 5 ? 'retry' : 'finish' }
......
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