Give WGD ksd more time and limit with mp500 flag

main.nf

@@ -1100,7 +1100,7 @@ process wgd_ksd_paranome{
     module 'paml'
     module 'fasttree'
 
-    time '10h'
+    time '15h'
     
     memory { 6.GB + 4.GB * task.attempt }
     errorStrategy { task.attempt < 5 ? 'retry' : 'finish' }
@@ -1117,7 +1117,7 @@ process wgd_ksd_paranome{
     
         """
         $activate_venv
-        OMP_NUM_THREADS=4 wgd ksd $mcl_file $species_cds_fasta -o . --ignore_prefixes
+        OMP_NUM_THREADS=4 wgd ksd $mcl_file $species_cds_fasta -mp500 -o . --ignore_prefixes
         mv *.ks.svg ${species}\\.ks.svg
         mv *.ks.tsv ${species}\\.ks.tsv
         """
@@ -1132,7 +1132,7 @@ process wgd_ksd_one_v_one{
     module 'paml'
     module 'fasttree'
 
-    time '10h'
+    time '12h'
     
     memory { 6.GB + 4.GB * task.attempt }
     errorStrategy { task.attempt < 5 ? 'retry' : 'finish' }